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Class: SpecimenTransportActivity

An activity through which a specimen is transported between locations or organizations.

URI: bdchm:SpecimenTransportActivity

classDiagram class SpecimenTransportActivity Entity <|-- SpecimenTransportActivity SpecimenTransportActivity : date_ended SpecimenTransportActivity --> TimePoint : date_ended SpecimenTransportActivity : date_started SpecimenTransportActivity --> TimePoint : date_started SpecimenTransportActivity : duration SpecimenTransportActivity : id SpecimenTransportActivity : transport_destination SpecimenTransportActivity --> Organization : transport_destination SpecimenTransportActivity : transport_origin SpecimenTransportActivity --> Organization : transport_origin

Inheritance

  • Entity
    • SpecimenTransportActivity

Slots

Name Cardinality and Range Description Inheritance
date_started 0..1
TimePoint		 The date when the activity began (in this case, a transport event) direct
date_ended 0..1
TimePoint		 The date when the activity ended (in this case, a transport event) direct
duration 0..*
String		 The length of time over which the activity was performed direct
transport_origin 0..1
Organization		 An organization (facility, site, lab, etc) from which the specimen was transp... direct
transport_destination 0..1
Organization		 An organization (facility, site, lab, etc) to which the specimen is delivered... direct
id 1..1
Uriorcurie		 The 'logical' identifier of the entity within the system of record Entity

Usages

used by used in type used
Specimen transport_activity range SpecimenTransportActivity

Comments

  • Think of the TransportActivity as being one of many possible occasions when the specimen was moved from one location to another, in some state or condition. We may want to capture dates and conditions for each.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/nhlbidatastage/bdchm

Mappings

Mapping Type Mapped Value
self bdchm:SpecimenTransportActivity
native bdchm:SpecimenTransportActivity

LinkML Source

Direct

name: SpecimenTransportActivity
description: An activity through which a specimen is transported between locations
  or organizations.
comments:
- Think of the TransportActivity as being one of many possible occasions when the
  specimen was moved from one location to another, in some state or condition.  We
  may want to capture dates and conditions for each.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  date_started:
    name: date_started
    description: The date when the activity began (in this case, a transport event).
    comments:
    - To allow for more precise specification of dates when an activity was performed,
      we provide date_started and date_ended attributes.  If source data only provides
      a single date, it SHOULD be entered as both the date_started and date_ended.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    range: TimePoint
    required: false
  date_ended:
    name: date_ended
    description: The date when the activity ended (in this case, a transport event).
    comments:
    - To allow for more precise specification of dates when an activity was performed,
      we provide date_started and date_ended attributes.  If source data only provides
      a single date, it SHOULD be entered as both the date_started and date_ended.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    range: TimePoint
    required: false
  duration:
    name: duration
    description: The length of time over which the activity was performed.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: true
    range: string
    required: false
    inlined: true
    inlined_as_list: true
  transport_origin:
    name: transport_origin
    description: An organization (facility, site, lab, etc) from which the specimen
      was transported as a result of the activity.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    range: Organization
    required: false
  transport_destination:
    name: transport_destination
    description: An organization (facility, site, lab, etc) to which the specimen
      is delivered as a result of the activity.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    range: Organization
    required: false

Induced

name: SpecimenTransportActivity
description: An activity through which a specimen is transported between locations
  or organizations.
comments:
- Think of the TransportActivity as being one of many possible occasions when the
  specimen was moved from one location to another, in some state or condition.  We
  may want to capture dates and conditions for each.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  date_started:
    name: date_started
    description: The date when the activity began (in this case, a transport event).
    comments:
    - To allow for more precise specification of dates when an activity was performed,
      we provide date_started and date_ended attributes.  If source data only provides
      a single date, it SHOULD be entered as both the date_started and date_ended.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    alias: date_started
    owner: SpecimenTransportActivity
    domain_of:
    - ResearchStudy
    - SpecimenCreationActivity
    - SpecimenProcessingActivity
    - SpecimenStorageActivity
    - SpecimenTransportActivity
    range: TimePoint
    required: false
  date_ended:
    name: date_ended
    description: The date when the activity ended (in this case, a transport event).
    comments:
    - To allow for more precise specification of dates when an activity was performed,
      we provide date_started and date_ended attributes.  If source data only provides
      a single date, it SHOULD be entered as both the date_started and date_ended.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    alias: date_ended
    owner: SpecimenTransportActivity
    domain_of:
    - ResearchStudy
    - SpecimenCreationActivity
    - SpecimenProcessingActivity
    - SpecimenStorageActivity
    - SpecimenTransportActivity
    range: TimePoint
    required: false
  duration:
    name: duration
    description: The length of time over which the activity was performed.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: true
    alias: duration
    owner: SpecimenTransportActivity
    domain_of:
    - SpecimenProcessingActivity
    - SpecimenStorageActivity
    - SpecimenTransportActivity
    range: string
    required: false
    inlined: true
    inlined_as_list: true
  transport_origin:
    name: transport_origin
    description: An organization (facility, site, lab, etc) from which the specimen
      was transported as a result of the activity.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    alias: transport_origin
    owner: SpecimenTransportActivity
    domain_of:
    - SpecimenTransportActivity
    range: Organization
    required: false
  transport_destination:
    name: transport_destination
    description: An organization (facility, site, lab, etc) to which the specimen
      is delivered as a result of the activity.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    alias: transport_destination
    owner: SpecimenTransportActivity
    domain_of:
    - SpecimenTransportActivity
    range: Organization
    required: false
  id:
    name: id
    description: The 'logical' identifier of the entity within the system of record.  The
      simple value of this attribute stands for an identifier of this data object
      within the system, it can be used as a reference from other objects within the
      same system (i.e. primary and foreign keys), and it should be unique per type
      of object. The same data object copied to a different system will likely have
      a different "id" in the new system since "id" values are system specific and
      do not represent persistent business identifiers. Business identifiers are assigned
      outside the information system and are captured in the "identifier" field. The
      "id" field is more likely to be a serially or randomly generated value that
      is assigned to the data object as it is created in a system.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SpecimenTransportActivity
    domain_of:
    - Entity
    range: uriorcurie
    required: true