Class: SpecimenQuantityObservation

name: SpecimenQuantityObservation
description: A structured object that describes a single data item about the quantity
  of an entity, as generated through a point-in-time observation or measurement.
comments:
- At the core of an Observation is a flexible key-value pair (or a structured collection
  of key-value pairs), where a 'key' field defines the type of observation made, and
  the 'value' field describes the value or outcome of the observation. The fact that
  the type of observation captured is defined in the data allow Observation to convey
  a broad range of observation data.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  observation_type:
    name: observation_type
    description: The specific type of observation made - i.e. the feature or characteristic
      that was observed, measured, estimated, etc..
    comments:
    - This field holds the 'key' in the core key-value pair comprised of the observation_type
      field and the relevant value(s) field.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    range: SpecimenQuantityObservationTypeEnum
    required: true
  method_type:
    name: method_type
    description: A type of method used in generating the Observation result.
    comments:
    - This may be a type of observational, measurement, experimental, or computational
      method specifying how to generate data (e.g. 'manual counting', 'bright field
      microscopy',). Or a Guideline or SOP specifying how to interpret data and/or
      encode the result of an  Observation (e.g. a Cancer Staging system such as that
      defined by the AJCC, or variant interpretation guideline such as that provided
      by the ACMG).
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    values_from:
    - crdch:enum_CRDCH_SpecimenQuantityObservation_method_type
    multivalued: true
    range: string
    required: false
  focus:
    name: focus
    description: The entity or entities directly observed/measured in generating an
      observation result.
    comments:
    - 'The ''focus'', ''subject'', and ''specimen'' fields are useful when data creators
      want an Observation object to stand on its own, so it can point back to the
      entities it is about.  These fields are not needed when an Observation is embedded
      in a Specimen or other entity, where focus, subject, and specimen can be determined
      from context. '
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: true
    range: Specimen
    required: false
    inlined: true
    inlined_as_list: true
  value_quantity:
    name: value_quantity
    description: The result of the observation, encoded as a free-text Quantity.
    comments:
    - One and only one of the value(x) fields must be populated.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    range: Quantity
    required: true

name: SpecimenQuantityObservation
description: A structured object that describes a single data item about the quantity
  of an entity, as generated through a point-in-time observation or measurement.
comments:
- At the core of an Observation is a flexible key-value pair (or a structured collection
  of key-value pairs), where a 'key' field defines the type of observation made, and
  the 'value' field describes the value or outcome of the observation. The fact that
  the type of observation captured is defined in the data allow Observation to convey
  a broad range of observation data.
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  observation_type:
    name: observation_type
    description: The specific type of observation made - i.e. the feature or characteristic
      that was observed, measured, estimated, etc..
    comments:
    - This field holds the 'key' in the core key-value pair comprised of the observation_type
      field and the relevant value(s) field.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    alias: observation_type
    owner: SpecimenQuantityObservation
    domain_of:
    - DimensionalObservation
    - SpecimenQualityObservation
    - SpecimenQuantityObservation
    range: SpecimenQuantityObservationTypeEnum
    required: true
  method_type:
    name: method_type
    description: A type of method used in generating the Observation result.
    comments:
    - This may be a type of observational, measurement, experimental, or computational
      method specifying how to generate data (e.g. 'manual counting', 'bright field
      microscopy',). Or a Guideline or SOP specifying how to interpret data and/or
      encode the result of an  Observation (e.g. a Cancer Staging system such as that
      defined by the AJCC, or variant interpretation guideline such as that provided
      by the ACMG).
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    values_from:
    - crdch:enum_CRDCH_SpecimenQuantityObservation_method_type
    multivalued: true
    alias: method_type
    owner: SpecimenQuantityObservation
    domain_of:
    - DimensionalObservation
    - DimensionalObservationSet
    - SpecimenQualityObservation
    - SpecimenQuantityObservation
    - SpecimenProcessingActivity
    - SpecimenStorageActivity
    range: string
    required: false
  focus:
    name: focus
    description: The entity or entities directly observed/measured in generating an
      observation result.
    comments:
    - 'The ''focus'', ''subject'', and ''specimen'' fields are useful when data creators
      want an Observation object to stand on its own, so it can point back to the
      entities it is about.  These fields are not needed when an Observation is embedded
      in a Specimen or other entity, where focus, subject, and specimen can be determined
      from context. '
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: true
    alias: focus
    owner: SpecimenQuantityObservation
    domain_of:
    - Document
    - SpecimenQualityObservation
    - SpecimenQuantityObservation
    range: Specimen
    required: false
    inlined: true
    inlined_as_list: true
  value_quantity:
    name: value_quantity
    description: The result of the observation, encoded as a free-text Quantity.
    comments:
    - One and only one of the value(x) fields must be populated.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    multivalued: false
    alias: value_quantity
    owner: SpecimenQuantityObservation
    domain_of:
    - DimensionalObservation
    - SpecimenQualityObservation
    - SpecimenQuantityObservation
    range: Quantity
    required: true
  id:
    name: id
    description: The 'logical' identifier of the entity within the system of record.  The
      simple value of this attribute stands for an identifier of this data object
      within the system, it can be used as a reference from other objects within the
      same system (i.e. primary and foreign keys), and it should be unique per type
      of object. The same data object copied to a different system will likely have
      a different "id" in the new system since "id" values are system specific and
      do not represent persistent business identifiers. Business identifiers are assigned
      outside the information system and are captured in the "identifier" field. The
      "id" field is more likely to be a serially or randomly generated value that
      is assigned to the data object as it is created in a system.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SpecimenQuantityObservation
    domain_of:
    - Entity
    range: uriorcurie
    required: true