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Class: SpecimenContainer

A vessel in which a specimen is held or to which it is attached - for storage or as a substrate for growth (e.g. a cell culture dish) or analysis (e.g. a microscope slide or 96-well plate)

URI: bdchm:SpecimenContainer

classDiagram class SpecimenContainer Entity <|-- SpecimenContainer SpecimenContainer : additive SpecimenContainer --> Substance : additive SpecimenContainer : container_number SpecimenContainer : container_type SpecimenContainer : id SpecimenContainer : parent_container SpecimenContainer --> SpecimenContainer : parent_container

Inheritance

Slots

Name Cardinality and Range Description Inheritance
container_type 0..1
String
The kind of the container direct
container_number 0..1
String
Informal number by which the container is referenced or identified (e direct
additive 0..*
Substance
A material substance added to the container (typically to support the primary... direct
parent_container 0..1
SpecimenContainer
A larger container of which this container is a part (e direct
id 1..1
Uriorcurie
The 'logical' identifier of the entity within the system of record Entity

Usages

used by used in type used
Specimen contained_in range SpecimenContainer
SpecimenContainer parent_container range SpecimenContainer
SpecimenStorageActivity container range SpecimenContainer

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/nhlbidatastage/bdchm

Mappings

Mapping Type Mapped Value
self bdchm:SpecimenContainer
native bdchm:SpecimenContainer

LinkML Source

Direct

name: SpecimenContainer
description: A vessel in which a specimen is held or to which it is attached - for
  storage or as a substrate for growth (e.g. a cell culture dish) or analysis (e.g.
  a microscope slide or 96-well plate)
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  container_type:
    name: container_type
    description: The kind of the container.
    examples:
    - value: Capillary blood collection tube
    - value: Sputum specimen container
    - value: Cell culture flask
    - value: Glass slide
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_SpecimenContainer_container_type
    multivalued: false
    range: string
    required: false
  container_number:
    name: container_number
    description: Informal number by which the container is referenced  or identified
      (e.g. a slide number, or a well number in a plate)
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    range: string
    required: false
  additive:
    name: additive
    description: A material substance added to the container (typically to support
      the primary contained object - e.g. culture media to support cell growth)
    examples:
    - value: DMEM
    - value: DMEM+Serum
    - value: RPMI
    - value: RPMI+Serum
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: true
    range: Substance
    required: false
  parent_container:
    name: parent_container
    description: A larger container of which this container is a part (e.g. the complete
      96-well plate of which a single well is a part)
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    range: SpecimenContainer
    required: false

Induced

name: SpecimenContainer
description: A vessel in which a specimen is held or to which it is attached - for
  storage or as a substrate for growth (e.g. a cell culture dish) or analysis (e.g.
  a microscope slide or 96-well plate)
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  container_type:
    name: container_type
    description: The kind of the container.
    examples:
    - value: Capillary blood collection tube
    - value: Sputum specimen container
    - value: Cell culture flask
    - value: Glass slide
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    values_from:
    - crdch:enum_CRDCH_SpecimenContainer_container_type
    multivalued: false
    alias: container_type
    owner: SpecimenContainer
    domain_of:
    - SpecimenContainer
    range: string
    required: false
  container_number:
    name: container_number
    description: Informal number by which the container is referenced  or identified
      (e.g. a slide number, or a well number in a plate)
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    alias: container_number
    owner: SpecimenContainer
    domain_of:
    - SpecimenContainer
    range: string
    required: false
  additive:
    name: additive
    description: A material substance added to the container (typically to support
      the primary contained object - e.g. culture media to support cell growth)
    examples:
    - value: DMEM
    - value: DMEM+Serum
    - value: RPMI
    - value: RPMI+Serum
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: true
    alias: additive
    owner: SpecimenContainer
    domain_of:
    - SpecimenContainer
    - SpecimenCreationActivity
    - SpecimenProcessingActivity
    range: Substance
    required: false
  parent_container:
    name: parent_container
    description: A larger container of which this container is a part (e.g. the complete
      96-well plate of which a single well is a part)
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    multivalued: false
    alias: parent_container
    owner: SpecimenContainer
    domain_of:
    - SpecimenContainer
    range: SpecimenContainer
    required: false
  id:
    name: id
    description: The 'logical' identifier of the entity within the system of record.  The
      simple value of this attribute stands for an identifier of this data object
      within the system, it can be used as a reference from other objects within the
      same system (i.e. primary and foreign keys), and it should be unique per type
      of object. The same data object copied to a different system will likely have
      a different "id" in the new system since "id" values are system specific and
      do not represent persistent business identifiers. Business identifiers are assigned
      outside the information system and are captured in the "identifier" field. The
      "id" field is more likely to be a serially or randomly generated value that
      is assigned to the data object as it is created in a system.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SpecimenContainer
    domain_of:
    - Entity
    range: uriorcurie
    required: true