Enum: SpecimenCollectionMethodType

URI: SpecimenCollectionMethodType

Permissible Values

Value	Meaning	Description
ORCHIECTOMY	None
METASTASECTOMY	None
AUTOPSY	None
UNKNOWN	None
ASPIRATE	None
RIGHT_HEMICOLECTOMY	None
INCISIONAL_BIOPSY	None
BLOOD_DRAW	None
PERITONEAL_LAVAGE	None
OPEN_RADICAL_PROSTATECTOMY	None
ABDOMINO_PERINEAL_RESECTION_OF_RECTUM	None
SALPINGECTOMY	None
ENDO_RECTAL_TUMOR_RESECTION	None
BIOPSY	None
SALPINGO_OOPHORECTOMY	None
NOT_ALLOWED_TO_COLLECT	None
WHIPPLE_PROCEDURE	None
ENUCLEATION	None
MODIFIED_RADICAL_MASTECTOMY	None
PARACENTESIS	None
OPEN_CRANIOTOMY	None
WEDGE_RESECTION	None
LAPAROSCOPIC_RADICAL_NEPHRECTOMY	None
OPEN_PARTIAL_NEPHRECTOMY	None
TRANSURETHRAL_RESECTION	None
SIGMOID_COLECTOMY	None
OOPHORECTOMY	None
TOTAL_HEPATECTOMY	None
INDETERMINANT	None
SUBTOTAL_RESECTION	None
LEFT_HEMICOLECTOMY	None
NEEDLE_BIOPSY	None
OTHER	None
PANCREATECTOMY	None
THORACOSCOPIC_BIOPSY	None
TOTAL_MASTECTOMY	None
EXCISIONAL_BIOPSY	None
BONE_MARROW_ASPIRATE	None
LOCAL_RESECTION	None
LOBECTOMY	None
FINE_NEEDLE_ASPIRATION	None
OMENTECTOMY	None
TUMOR_RESECTION	None
CYSTECTOMY	None
GROSS_TOTAL_RESECTION	None
THORACENTESIS	None
ANTERIOR_RESECTION_OF_RECTUM	None
TRANSPLANT	None
LAPAROSCOPIC_PARTIAL_NEPHRECTOMY	None
LAPAROSCOPIC_RADICAL_PROSTATECTOMY_WITH_ROBOTICS	None
PNEUMONECTOMY	None
PAN_PROCTO_COLECTOMY	None
HYSTERECTOMY_NOS	None
CORE_BIOPSY	None
SIMPLE_MASTECTOMY	None
LUMPECTOMY	None
ENDOSCOPIC_BIOPSY	None
SIMPLE_HYSTERECTOMY	None
LYMPHADENECTOMY	None
LAPAROSCOPIC_BIOPSY	None
TUMOR_DEBULKING	None
ASCITES_DRAINAGE	None
ENDOSCOPIC_MUCOSAL_RESECTION	None
LAPAROSCOPIC_RADICAL_PROSTATECTOMY_WITHOUT_ROBOTICS	None
TOTAL_COLECTOMY	None
LIQUID_BIOPSY	None
RADICAL_HYSTERECTOMY	None
SURGICAL_RESECTION	None
OPEN_RADICAL_NEPHRECTOMY	None
TRANSVERSE_COLECTOMY	None
HAND_ASSISTED_LAPAROSCOPIC_RADICAL_NEPHRECTOMY	None
PUNCH_BIOPSY	None
PARTIAL_HEPATECTOMY	None
SUPRACERVICAL_HYSTERECTOMY	None
OTHER_SURGICAL_RESECTION	None
NOT_REPORTED	None
FULL_HYSTERECTOMY	None
TONSILLECTOMY	None
SUPRAGLOTTIC_LARYNGECTOMY	None
SUPERFICIAL_PAROTIDECTOMY	None
LARYNGOPHARYNGECTOMY	None
MAXILLECTOMY	None
PARTIAL_NEPHRECTOMY	None
MANDIBULECTOMY	None
BUCCAL_MUCOSAL_RESECTION	None
VERTICAL_HEMILARYNGECTOMY	None
TOTAL_NEPHRECTOMY	None
TOTAL_LARYNGECTOMY	None
TRANSORAL_LASER_EXCISION	None
PAROTIDECTOMY_NOS	None
RADICAL_MAXILLECTOMY	None
ENDOLARYNGEAL_EXCISION	None
PALATECTOMY	None
GLOSSECTOMY	None
PARTIAL_LARYNGECTOMY	None
LYMPH_NODE_DISSECTION	None
RADICAL_PROSTATECTOMY	None
DEEP_PAROTIDECTOMY	None
SUBTOTAL_PROSTATECTOMY	None
RADICAL_NEPHRECTOMY	None
SUPRACRICOID_LARYNGECTOMY	None
PARTIAL_MAXILLECTOMY	None

Slots

Name	Description
collection_method_type	The type of method applied in collecting a sample from its original source

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/nhlbidatastage/bdchm

LinkML Source

name: SpecimenCollectionMethodType
from_schema: https://w3id.org/nhlbidatastage/bdchm
rank: 1000
permissible_values:
  ORCHIECTOMY:
    text: ORCHIECTOMY
  METASTASECTOMY:
    text: METASTASECTOMY
  AUTOPSY:
    text: AUTOPSY
  UNKNOWN:
    text: UNKNOWN
  ASPIRATE:
    text: ASPIRATE
  RIGHT_HEMICOLECTOMY:
    text: RIGHT_HEMICOLECTOMY
  INCISIONAL_BIOPSY:
    text: INCISIONAL_BIOPSY
  BLOOD_DRAW:
    text: BLOOD_DRAW
  PERITONEAL_LAVAGE:
    text: PERITONEAL_LAVAGE
  OPEN_RADICAL_PROSTATECTOMY:
    text: OPEN_RADICAL_PROSTATECTOMY
  ABDOMINO_PERINEAL_RESECTION_OF_RECTUM:
    text: ABDOMINO_PERINEAL_RESECTION_OF_RECTUM
  SALPINGECTOMY:
    text: SALPINGECTOMY
  ENDO_RECTAL_TUMOR_RESECTION:
    text: ENDO_RECTAL_TUMOR_RESECTION
  BIOPSY:
    text: BIOPSY
  SALPINGO_OOPHORECTOMY:
    text: SALPINGO_OOPHORECTOMY
  NOT_ALLOWED_TO_COLLECT:
    text: NOT_ALLOWED_TO_COLLECT
  WHIPPLE_PROCEDURE:
    text: WHIPPLE_PROCEDURE
  ENUCLEATION:
    text: ENUCLEATION
  MODIFIED_RADICAL_MASTECTOMY:
    text: MODIFIED_RADICAL_MASTECTOMY
  PARACENTESIS:
    text: PARACENTESIS
  OPEN_CRANIOTOMY:
    text: OPEN_CRANIOTOMY
  WEDGE_RESECTION:
    text: WEDGE_RESECTION
  LAPAROSCOPIC_RADICAL_NEPHRECTOMY:
    text: LAPAROSCOPIC_RADICAL_NEPHRECTOMY
  OPEN_PARTIAL_NEPHRECTOMY:
    text: OPEN_PARTIAL_NEPHRECTOMY
  TRANSURETHRAL_RESECTION:
    text: TRANSURETHRAL_RESECTION
  SIGMOID_COLECTOMY:
    text: SIGMOID_COLECTOMY
  OOPHORECTOMY:
    text: OOPHORECTOMY
  TOTAL_HEPATECTOMY:
    text: TOTAL_HEPATECTOMY
  INDETERMINANT:
    text: INDETERMINANT
  SUBTOTAL_RESECTION:
    text: SUBTOTAL_RESECTION
  LEFT_HEMICOLECTOMY:
    text: LEFT_HEMICOLECTOMY
  NEEDLE_BIOPSY:
    text: NEEDLE_BIOPSY
  OTHER:
    text: OTHER
  PANCREATECTOMY:
    text: PANCREATECTOMY
  THORACOSCOPIC_BIOPSY:
    text: THORACOSCOPIC_BIOPSY
  TOTAL_MASTECTOMY:
    text: TOTAL_MASTECTOMY
  EXCISIONAL_BIOPSY:
    text: EXCISIONAL_BIOPSY
  BONE_MARROW_ASPIRATE:
    text: BONE_MARROW_ASPIRATE
  LOCAL_RESECTION:
    text: LOCAL_RESECTION
  LOBECTOMY:
    text: LOBECTOMY
  FINE_NEEDLE_ASPIRATION:
    text: FINE_NEEDLE_ASPIRATION
  OMENTECTOMY:
    text: OMENTECTOMY
  TUMOR_RESECTION:
    text: TUMOR_RESECTION
  CYSTECTOMY:
    text: CYSTECTOMY
  GROSS_TOTAL_RESECTION:
    text: GROSS_TOTAL_RESECTION
  THORACENTESIS:
    text: THORACENTESIS
  ANTERIOR_RESECTION_OF_RECTUM:
    text: ANTERIOR_RESECTION_OF_RECTUM
  TRANSPLANT:
    text: TRANSPLANT
  LAPAROSCOPIC_PARTIAL_NEPHRECTOMY:
    text: LAPAROSCOPIC_PARTIAL_NEPHRECTOMY
  LAPAROSCOPIC_RADICAL_PROSTATECTOMY_WITH_ROBOTICS:
    text: LAPAROSCOPIC_RADICAL_PROSTATECTOMY_WITH_ROBOTICS
  PNEUMONECTOMY:
    text: PNEUMONECTOMY
  PAN_PROCTO_COLECTOMY:
    text: PAN_PROCTO_COLECTOMY
  HYSTERECTOMY_NOS:
    text: HYSTERECTOMY_NOS
  CORE_BIOPSY:
    text: CORE_BIOPSY
  SIMPLE_MASTECTOMY:
    text: SIMPLE_MASTECTOMY
  LUMPECTOMY:
    text: LUMPECTOMY
  ENDOSCOPIC_BIOPSY:
    text: ENDOSCOPIC_BIOPSY
  SIMPLE_HYSTERECTOMY:
    text: SIMPLE_HYSTERECTOMY
  LYMPHADENECTOMY:
    text: LYMPHADENECTOMY
  LAPAROSCOPIC_BIOPSY:
    text: LAPAROSCOPIC_BIOPSY
  TUMOR_DEBULKING:
    text: TUMOR_DEBULKING
  ASCITES_DRAINAGE:
    text: ASCITES_DRAINAGE
  ENDOSCOPIC_MUCOSAL_RESECTION:
    text: ENDOSCOPIC_MUCOSAL_RESECTION
  LAPAROSCOPIC_RADICAL_PROSTATECTOMY_WITHOUT_ROBOTICS:
    text: LAPAROSCOPIC_RADICAL_PROSTATECTOMY_WITHOUT_ROBOTICS
  TOTAL_COLECTOMY:
    text: TOTAL_COLECTOMY
  LIQUID_BIOPSY:
    text: LIQUID_BIOPSY
  RADICAL_HYSTERECTOMY:
    text: RADICAL_HYSTERECTOMY
  SURGICAL_RESECTION:
    text: SURGICAL_RESECTION
  OPEN_RADICAL_NEPHRECTOMY:
    text: OPEN_RADICAL_NEPHRECTOMY
  TRANSVERSE_COLECTOMY:
    text: TRANSVERSE_COLECTOMY
  HAND_ASSISTED_LAPAROSCOPIC_RADICAL_NEPHRECTOMY:
    text: HAND_ASSISTED_LAPAROSCOPIC_RADICAL_NEPHRECTOMY
  PUNCH_BIOPSY:
    text: PUNCH_BIOPSY
  PARTIAL_HEPATECTOMY:
    text: PARTIAL_HEPATECTOMY
  SUPRACERVICAL_HYSTERECTOMY:
    text: SUPRACERVICAL_HYSTERECTOMY
  OTHER_SURGICAL_RESECTION:
    text: OTHER_SURGICAL_RESECTION
  NOT_REPORTED:
    text: NOT_REPORTED
  FULL_HYSTERECTOMY:
    text: FULL_HYSTERECTOMY
  TONSILLECTOMY:
    text: TONSILLECTOMY
  SUPRAGLOTTIC_LARYNGECTOMY:
    text: SUPRAGLOTTIC_LARYNGECTOMY
  SUPERFICIAL_PAROTIDECTOMY:
    text: SUPERFICIAL_PAROTIDECTOMY
  LARYNGOPHARYNGECTOMY:
    text: LARYNGOPHARYNGECTOMY
  MAXILLECTOMY:
    text: MAXILLECTOMY
  PARTIAL_NEPHRECTOMY:
    text: PARTIAL_NEPHRECTOMY
  MANDIBULECTOMY:
    text: MANDIBULECTOMY
  BUCCAL_MUCOSAL_RESECTION:
    text: BUCCAL_MUCOSAL_RESECTION
  VERTICAL_HEMILARYNGECTOMY:
    text: VERTICAL_HEMILARYNGECTOMY
  TOTAL_NEPHRECTOMY:
    text: TOTAL_NEPHRECTOMY
  TOTAL_LARYNGECTOMY:
    text: TOTAL_LARYNGECTOMY
  TRANSORAL_LASER_EXCISION:
    text: TRANSORAL_LASER_EXCISION
  PAROTIDECTOMY_NOS:
    text: PAROTIDECTOMY_NOS
  RADICAL_MAXILLECTOMY:
    text: RADICAL_MAXILLECTOMY
  ENDOLARYNGEAL_EXCISION:
    text: ENDOLARYNGEAL_EXCISION
  PALATECTOMY:
    text: PALATECTOMY
  GLOSSECTOMY:
    text: GLOSSECTOMY
  PARTIAL_LARYNGECTOMY:
    text: PARTIAL_LARYNGECTOMY
  LYMPH_NODE_DISSECTION:
    text: LYMPH_NODE_DISSECTION
  RADICAL_PROSTATECTOMY:
    text: RADICAL_PROSTATECTOMY
  DEEP_PAROTIDECTOMY:
    text: DEEP_PAROTIDECTOMY
  SUBTOTAL_PROSTATECTOMY:
    text: SUBTOTAL_PROSTATECTOMY
  RADICAL_NEPHRECTOMY:
    text: RADICAL_NEPHRECTOMY
  SUPRACRICOID_LARYNGECTOMY:
    text: SUPRACRICOID_LARYNGECTOMY
  PARTIAL_MAXILLECTOMY:
    text: PARTIAL_MAXILLECTOMY