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Class: Condition

_Conditions are records of a Person suggesting the presence of a disease or medical condition stated as a diagnosis, a sign or a symptom, which is either observed by a Provider or reported by the patient. Conditions are recorded in different sources and levels of standardization. _

URI: bdchm:Condition

classDiagram class Condition Entity <|-- Condition Condition : age_at_condition_end Condition : age_at_condition_start Condition : associated_participant Condition --> Participant : associated_participant Condition : associated_visit Condition --> Visit : associated_visit Condition : condition_concept Condition --> ConditionConceptEnum : condition_concept Condition : condition_provenance Condition --> ConditionProvenanceEnum : condition_provenance Condition : condition_status Condition --> ConditionStatusEnum : condition_status Condition : id Condition : identity Condition --> Identifier : identity Condition : relationship_to_participant

Inheritance

Slots

Name Cardinality and Range Description Inheritance
identity 0..*
Identifier		 A 'business' identifier or accession number for the entity, typically as prov... direct
condition_concept 0..1
ConditionConceptEnum		 The coded value for the presence of a disease or medical condition stated as ... direct
age_at_condition_start 0..1
Integer		 The Participant's age (expressed in days) when the condition was first record... direct
age_at_condition_end 0..1
Integer		 The Participant's age (expressed in days) when the condition was recorded as ... direct
condition_provenance 0..1
ConditionProvenanceEnum		 A value representing the provenance of the Condition record direct
condition_status 0..1
ConditionStatusEnum		 A value indicating whether the medical condition described in this record is ... direct
relationship_to_participant 0..1
String		 A value indicating the relationship between the Participant to which the Cond... direct
associated_participant 0..1
Participant		 A reference to the Participant to which the Condition is attributed direct
associated_visit 0..1
Visit		 A reference to the Visit during which this QuestionnaireResponse was captured direct
id 1..1
Uriorcurie		 The 'logical' identifier of the entity within the system of record Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/nhlbidatastage/bdchm

Mappings

Mapping Type Mapped Value
self bdchm:Condition
native bdchm:Condition

LinkML Source

Direct

name: Condition
description: 'Conditions are records of a Person suggesting the presence of a disease
  or medical condition stated as a diagnosis, a sign or a symptom, which is either
  observed by a Provider or reported by the patient. Conditions are recorded in different
  sources and levels of standardization. '
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
slots:
- identity
attributes:
  condition_concept:
    name: condition_concept
    description: The coded value for the presence of a disease or medical condition
      stated as a diagnosis, a sign or a symptom, coded to the Human Phenotype Ontology
      or MONDO.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    range: ConditionConceptEnum
  age_at_condition_start:
    name: age_at_condition_start
    description: The Participant's age (expressed in days) when the condition was
      first recorded.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    range: integer
    unit:
      ucum_code: d
  age_at_condition_end:
    name: age_at_condition_end
    description: The Participant's age (expressed in days) when the condition was
      recorded as having been resolved.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    range: integer
    unit:
      ucum_code: d
  condition_provenance:
    name: condition_provenance
    description: A value representing the provenance of the Condition record
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    range: ConditionProvenanceEnum
  condition_status:
    name: condition_status
    description: A value indicating whether the medical condition described in this
      record is present, absent, or unknown for this individual patient.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    range: ConditionStatusEnum
  relationship_to_participant:
    name: relationship_to_participant
    description: A value indicating the relationship between the Participant to which
      the Condition is attributed and the individual who had the reported Condition.  If
      the Condition is affecting the participant themselves, then 'Self' is the appropriate
      relationship.  If the Condition is affecting a family member (e.g. a parent
      of the Participant) then an appropriate relationship should be provided (e.g.
      'Parent')
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    range: string
  associated_participant:
    name: associated_participant
    description: A reference to the Participant to which the Condition is attributed.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    range: Participant
  associated_visit:
    name: associated_visit
    description: A reference to the Visit during which this QuestionnaireResponse
      was captured.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    range: Visit

Induced

name: Condition
description: 'Conditions are records of a Person suggesting the presence of a disease
  or medical condition stated as a diagnosis, a sign or a symptom, which is either
  observed by a Provider or reported by the patient. Conditions are recorded in different
  sources and levels of standardization. '
from_schema: https://w3id.org/nhlbidatastage/bdchm
is_a: Entity
attributes:
  condition_concept:
    name: condition_concept
    description: The coded value for the presence of a disease or medical condition
      stated as a diagnosis, a sign or a symptom, coded to the Human Phenotype Ontology
      or MONDO.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    alias: condition_concept
    owner: Condition
    domain_of:
    - Condition
    range: ConditionConceptEnum
  age_at_condition_start:
    name: age_at_condition_start
    description: The Participant's age (expressed in days) when the condition was
      first recorded.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    alias: age_at_condition_start
    owner: Condition
    domain_of:
    - Condition
    range: integer
    unit:
      ucum_code: d
  age_at_condition_end:
    name: age_at_condition_end
    description: The Participant's age (expressed in days) when the condition was
      recorded as having been resolved.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    alias: age_at_condition_end
    owner: Condition
    domain_of:
    - Condition
    range: integer
    unit:
      ucum_code: d
  condition_provenance:
    name: condition_provenance
    description: A value representing the provenance of the Condition record
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    alias: condition_provenance
    owner: Condition
    domain_of:
    - Condition
    range: ConditionProvenanceEnum
  condition_status:
    name: condition_status
    description: A value indicating whether the medical condition described in this
      record is present, absent, or unknown for this individual patient.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    alias: condition_status
    owner: Condition
    domain_of:
    - Condition
    range: ConditionStatusEnum
  relationship_to_participant:
    name: relationship_to_participant
    description: A value indicating the relationship between the Participant to which
      the Condition is attributed and the individual who had the reported Condition.  If
      the Condition is affecting the participant themselves, then 'Self' is the appropriate
      relationship.  If the Condition is affecting a family member (e.g. a parent
      of the Participant) then an appropriate relationship should be provided (e.g.
      'Parent')
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    alias: relationship_to_participant
    owner: Condition
    domain_of:
    - Condition
    range: string
  associated_participant:
    name: associated_participant
    description: A reference to the Participant to which the Condition is attributed.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    alias: associated_participant
    owner: Condition
    domain_of:
    - Demography
    - Visit
    - Condition
    range: Participant
  associated_visit:
    name: associated_visit
    description: A reference to the Visit during which this QuestionnaireResponse
      was captured.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    alias: associated_visit
    owner: Condition
    domain_of:
    - QuestionnaireResponse
    - Condition
    range: Visit
  identity:
    name: identity
    description: A 'business' identifier or accession number for the entity, typically
      as provided by an external system or authority, that are globally unique and
      persist across implementing systems. Also, since these identifiers are created
      outside the information system through a specific business process, the Identifier
      type has additional attributes to capture this additional metadata so the actual
      identifier values are qualified by the context that created those values. This
      additional context allows "identifier" instances to be transmitted as business
      data across systems while still being able to trace them back to the system
      of origin.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    multivalued: true
    alias: identity
    owner: Condition
    domain_of:
    - Person
    - Demography
    - Participant
    - ResearchStudy
    - Organization
    - Questionnaire
    - QuestionnaireItem
    - Condition
    - Document
    - Specimen
    - BiologicProduct
    range: Identifier
  id:
    name: id
    description: The 'logical' identifier of the entity within the system of record.  The
      simple value of this attribute stands for an identifier of this data object
      within the system, it can be used as a reference from other objects within the
      same system (i.e. primary and foreign keys), and it should be unique per type
      of object. The same data object copied to a different system will likely have
      a different "id" in the new system since "id" values are system specific and
      do not represent persistent business identifiers. Business identifiers are assigned
      outside the information system and are captured in the "identifier" field. The
      "id" field is more likely to be a serially or randomly generated value that
      is assigned to the data object as it is created in a system.
    from_schema: https://w3id.org/nhlbidatastage/bdchm
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Condition
    domain_of:
    - Entity
    range: uriorcurie
    required: true